Publications

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D
Dimond, Christopher C., Robert J. Cabin, and Janie S. Brooks. "Dinosaurs, Feathers and Behavioral Cues: Defining the Visual Display Hypothesis for the Adaptive Function of Feathers in Non-Avian Theropods." BIOS 82 (2011): 58-63.
Davis, M. A., M. K. Chew, R. J. Hobbs, A. E. Lugo, J. J. Ewel, G. J. Verneij, J. H. Brown, M. K. Rosenzweig, M. R. Gardener, S. P. Carroll et al. "Don't judge species on their origins." Nature 474 (2011).
Daniels, Bryan C., William S. Ryu, and Ilya Nemenman. "Automated, predictive, and interpretable inference of Caenorhabditis elegans escape dynamics." PNAS 116, no. 7226 (2019).
Daniels, Bryan C., and Ilya Nemenman. "Automated adaptive inference of phenomenological dynamical models." 6 (2015): 8133 EP -.
Daniels, Bryan C., Hyunju Kim, Douglas Moore, Siyu Zhou, Harrison B. Smith, Bradley Karas, Stuart A. Kauffman, and Sara I. Walker. "Criticality Distinguishes the Ensemble of Biological Regulatory Networks." Phys. Rev. Lett. 121, no. 13 (2018).
Daniels, Bryan C., Christopher J. Ellison, David C. Krakauer, and Jessica C. Flack. "Quantifying collectivity." Current Opinion in Neurobiology 37 (2016): 106-113.
Daniels, Bryan C., William S.Ryu, and Ilya Nemenman. Automated, predictive, and interpretable inference of C. elegans escape dynamics., 2018.
Daniels, Bryan C., David C. Krakauer, and Jessica C. Flack. "Control of finite critical behaviour in a small-scale social system." Nature Communications 8 (2017).
Daniels, Bryan C., Dirk Fey, Maciej Dobrzyński, B. Munsky, W. Hlavacek, and L. Tsimring. "Parameter Estimation, Sloppiness, and Model Identifiability." In In Quantitative Biology: Theory, Computational Methods, and Models. MIT Press, 2018.
Daniels, Bryan C., Jessica C. Flack, and David C. Krakauer. "Dual Coding Theory Explains Biphasic Collective Computation in Neural Decision-Making." Frontiers in Neuroscience 11 (2017): 313.
Daniels, Bryan C., and Pawel Romanczuk. "Quantifying the impact of network structure on speed and accuracy in collective decision-making." (2019).
Damerow, Julia. The Game Of Life, by John Horton Conway In Embryo Project Encyclopedia., 2010.
Damerow, Julia. John von Neumann’s Cellular Automata In Embryo Project Encyclopedia., 2010.
Damerow, Julia. Genetic Programming: Artificial Nervous Systems, Artificial Embryos and Embryological Electronics,” by Hugo de Garis In Embryo Project Encyclopedia., 2010.
Damerow, Julia, and Dirk Wintergrün. "The Hitchhiker’s Guide to Data in the History of Science." Isis 110, no. 3 (2019).
Damerow, Julia. John von Neumann In Embryo Project Encyclopedia., 2010.
Damerow, Julia, Erick Peirson, and Manfred D. Laubichler. "A Computational Research System for the History of Science." Culture and Cognition: Essays in Honor of Peter Damerow 11 (2019).
Damerow, Julia. “The Chemical Basis of Morphogenesis,” by Alan M. Turing In Embryo Project Encyclopedia., 2010.
Damerow, Julia. Alan Mathison Turing In Embryo Project Encyclopedia., 2010.
Damerow, Julia, B.R. Erick Peirson, and Manfred Laubichler. "The Giles Ecosystem – Storage, Text Extraction, and OCR of Documents." Journal of Open Research Software 5, no. 1 (2017).