Publications

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D
Dimond, Christopher C., Cabin, Robert J., and Brooks, Janie S.. "Dinosaurs, Feathers and Behavioral Cues: Defining the Visual Display Hypothesis for the Adaptive Function of Feathers in Non-Avian Theropods." BIOS 82 (2011): 58-63.
Davis, M. A., Chew, M. K., Hobbs, R. J., Lugo, A. E., Ewel, J. J., Verneij, G. J., Brown, J. H., Rosenzweig, M. K., Gardener, M. R., Carroll, S. P. et al. "Don't judge species on their origins." Nature 474 (2011).
Daniels, Bryan C., S.Ryu, William, and Nemenman, Ilya. Automated, predictive, and interpretable inference of C. elegans escape dynamics., 2018.
Daniels, Bryan C., Krakauer, David C., and Flack, Jessica C.. "Control of finite critical behaviour in a small-scale social system." Nature Communications 8 (2017).
Daniels, Bryan C., Fey, Dirk, Dobrzyński, Maciej, Munsky, B., Hlavacek, W., and Tsimring, L.. "Parameter Estimation, Sloppiness, and Model Identifiability." In In Quantitative Biology: Theory, Computational Methods, and Models. MIT Press, 2018.
Daniels, Bryan C., Flack, Jessica C., and Krakauer, David C.. "Dual Coding Theory Explains Biphasic Collective Computation in Neural Decision-Making." Frontiers in Neuroscience 11 (2017): 313.
Daniels, Bryan C., and Romanczuk, Pawel. "Quantifying the impact of network structure on speed and accuracy in collective decision-making." (2019).
Daniels, Bryan C., Ryu, William S., and Nemenman, Ilya. "Automated, predictive, and interpretable inference of Caenorhabditis elegans escape dynamics." PNAS 116, no. 7226 (2019).
Daniels, Bryan C., and Nemenman, Ilya. "Automated adaptive inference of phenomenological dynamical models." 6 (2015): 8133 EP -.
Daniels, Bryan C., Kim, Hyunju, Moore, Douglas, Zhou, Siyu, Smith, Harrison B., Karas, Bradley, Kauffman, Stuart A., and Walker, Sara I.. "Criticality Distinguishes the Ensemble of Biological Regulatory Networks." Phys. Rev. Lett. 121, no. 13 (2018).
Daniels, Bryan C., Ellison, Christopher J., Krakauer, David C., and Flack, Jessica C.. "Quantifying collectivity." Current Opinion in Neurobiology 37 (2016): 106-113.
Damerow, Julia. John von Neumann In Embryo Project Encyclopedia., 2010.
Damerow, Julia, Peirson, Erick, and Laubichler, Manfred D.. "A Computational Research System for the History of Science." Culture and Cognition: Essays in Honor of Peter Damerow 11 (2019).
Damerow, Julia. “The Chemical Basis of Morphogenesis,” by Alan M. Turing In Embryo Project Encyclopedia., 2010.
Damerow, Julia. Alan Mathison Turing In Embryo Project Encyclopedia., 2010.
Damerow, Julia, Peirson, B.R. Erick, and Laubichler, Manfred. "The Giles Ecosystem – Storage, Text Extraction, and OCR of Documents." Journal of Open Research Software 5, no. 1 (2017).
Damerow, Julia. The Game Of Life, by John Horton Conway In Embryo Project Encyclopedia., 2010.
Damerow, Julia. John von Neumann’s Cellular Automata In Embryo Project Encyclopedia., 2010.
Damerow, Julia. Genetic Programming: Artificial Nervous Systems, Artificial Embryos and Embryological Electronics,” by Hugo de Garis In Embryo Project Encyclopedia., 2010.
Damerow, Julia, and Wintergrün, Dirk. "The Hitchhiker’s Guide to Data in the History of Science." Isis 110, no. 3 (2019).