Publications
] "Automated adaptive inference of phenomenological dynamical models." 6 (2015): 8133 EP -.
"Automated, predictive, and interpretable inference of Caenorhabditis elegans escape dynamics." PNAS 116, no. 7226 (2019).
"Benefits and Perils of Synthesis, Review of Enrico Coen, "Cells to Civilizations"." SCIENCE 338 (2012): 608.
"Between epigenetic research and politic commitment: Marcello Buiatti’s portrait." Studies in the History of Biology (2013).
"Biological Clocks and the Formation of Human Tooth Enamel." Embryo Project Encyclopedia (2013).
"The Borges Challenge in Biology, Review of "Genetics and the Logic of Evolution"." BioEssays 28 (2006): 768-769.
"Boveri’s long experiment: sea urchin merogons and the establishment of the role of nuclear chromosomes in development." Developmental Biology 314 (2008): 1-11.
"Call to Reshape University Curricula." Nature 467 (2010): 788.
"Carl Gegenbaur (1826-1903): Integrating comparative anatomy and embryology." Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 300B (2003): 23-31.
"The Challenges and Scope of Theoretical Biology." Journal of Theoretical Biology 276 (2011): 269-276.
"Changing Perceptions of Change: The Role of Scientists in Tamarix and River Management." Restoration Ecology 17 (2009).
"Character identification in evolutionary biology: The role of the organism." Theory in Biosciences 119 (2000): 20-40.
"Characterization of the murine SIRT3 mitochondrial localization sequence and comparison of mitochondrial enrichment and deacetylase activity of long and short SIRT3 isoforms." Journal of cellular biochemistry 110 (2010): 238-247.
"Collective memory in macaque conflict implied by temporal scaling collapse." Journal of the Royal Society Interface 14 (2017).
"Computational History of Knowledge: Challenges and Opportunities." Isis 110, no. 3 (2019).
"Computational Perspectives in the History of Science." Isis 104 (2013): 119-130.
"A Computational Research System for the History of Science." Culture and Cognition: Essays in Honor of Peter Damerow 11 (2019).
"Conference Report: Where is theoretical biology heading?" Biological Theory 2 (2007): 210-212.
"Conrad H. Waddington: Towards a Theoretical Biology." Biological Theory 3 (2008).
"A Constrained View of Evo-Devo's Roots, Review of "The Changing Role of the Embryo in Evolutionary Thought"." SCIENCE 309 (2005): 1020-1021.
"Control of finite critical behaviour in a small-scale social system." Nature Communications 8 (2017).
"Criticality Distinguishes the Ensemble of Biological Regulatory Networks." Phys. Rev. Lett. 121, no. 13 (2018).
"Decomposing multilocus linkage disequilibrium." Genetics 166 (2004): 1581-1583.
"Development and evolution of caste dimorphism in honey bees — a modeling approach." Ecology and Evolution 2 (2012): 3098-3109.
"Developmental Evolution as a Mechanistic Science: The Inference from Developmental Mechanisms to Evolutionary Processes." American Zoologist 40 (2000): 819-831.
