Publications
Convenient Interface to Inverse Ising (ConIII): A Python package for solving maximum entropy models., 2018.
Criticality Distinguishes the Ensemble of Biological Regulatory Networks." Phys. Rev. Lett. 121, no. 13 (2018).
"From systems to biology: A computational analysis of the research articles on systems biology from 1992 to 2013." PLOS ONE 13, no. 7 (2018).
"Locating decision-making circuits in a heterogeneous neural network." Frontiers in Applied Mathematics and Statistics 4 (2018).
"Parameter Estimation, Sloppiness, and Model Identifiability." In In Quantitative Biology: Theory, Computational Methods, and Models. MIT Press, 2018.
" "Automated, predictive, and interpretable inference of Caenorhabditis elegans escape dynamics." PNAS 116, no. 7226 (2019).
"Computational History of Knowledge: Challenges and Opportunities." Isis 110, no. 3 (2019).
"A Computational Research System for the History of Science." Culture and Cognition: Essays in Honor of Peter Damerow 11 (2019).
" "The History of Science and the Science of History: Computational Methods, Algorithms, and the Future of the Field." Isis 110, no. 3 (2019).
"The Hitchhiker’s Guide to Data in the History of Science." Isis 110, no. 3 (2019).
"Introduction." Isis 110, no. 3 (2019).
"Network Analysis for the Digital Humanities: Principles, Problems, Extensions." Isis 110, no. 3 (2019).
"Quantifying the impact of network structure on speed and accuracy in collective decision-making." (2019).
"Triangulation of History Using Textual Data." Isis 110, no. 3 (2019).
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