Publications

Found 266 results
Author Title Type [ Year(Desc)]
2018
Lee, Edward D., and Daniels, Bryan C.. Convenient Interface to Inverse Ising (ConIII): A Python package for solving maximum entropy models., 2018.
Daniels, Bryan C., Kim, Hyunju, Moore, Douglas, Zhou, Siyu, Smith, Harrison B., Karas, Bradley, Kauffman, Stuart A., and Walker, Sara I.. "Criticality Distinguishes the Ensemble of Biological Regulatory Networks." Phys. Rev. Lett. 121, no. 13 (2018).
Zou, Yawen, and Laubichler, Manfred. "From systems to biology: A computational analysis of the research articles on systems biology from 1992 to 2013." PLOS ONE 13, no. 7 (2018).
Arehart, Emerson, Jin, Tangxin, and Daniels, Bryan C.. "Locating decision-making circuits in a heterogeneous neural network." Frontiers in Applied Mathematics and Statistics 4 (2018).
Daniels, Bryan C., Fey, Dirk, Dobrzyński, Maciej, Munsky, B., Hlavacek, W., and Tsimring, L.. "Parameter Estimation, Sloppiness, and Model Identifiability." In In Quantitative Biology: Theory, Computational Methods, and Models. MIT Press, 2018.
Borriello, Enrico, Walker, Sara, and Laubichler, Manfred. "A unified, mechanistic framework for developmental and evolutionary change." (2018).
2019
Daniels, Bryan C., Ryu, William S., and Nemenman, Ilya. "Automated, predictive, and interpretable inference of Caenorhabditis elegans escape dynamics." PNAS 116, no. 7226 (2019).
Laubichler, Manfred D., Maienschein, Jane, and Renn, Jürgen. "Computational History of Knowledge: Challenges and Opportunities." Isis 110, no. 3 (2019).
Damerow, Julia, Peirson, Erick, and Laubichler, Manfred D.. "A Computational Research System for the History of Science." Culture and Cognition: Essays in Honor of Peter Damerow 11 (2019).
Lee, Edward D., Daniels, Bryan C., Myers, Christopher R., Krakauer, David C., and Flack, Jessica C.. "Emergent regularities and scaling in armed conflict data." (2019).
Gibson, Abraham, and Ermus, Cindy. "The History of Science and the Science of History: Computational Methods, Algorithms, and the Future of the Field." Isis 110, no. 3 (2019).
Damerow, Julia, and Wintergrün, Dirk. "The Hitchhiker’s Guide to Data in the History of Science." Isis 110, no. 3 (2019).
Gibson, Abraham, Laubichler, Manfred D., and Maienschein, Jane. "Introduction." Isis 110, no. 3 (2019).
Painter, Deryc T., Daniels, Bryan C., and Jost, Jürgen. "Network Analysis for the Digital Humanities: Principles, Problems, Extensions." Isis 110, no. 3 (2019).
Daniels, Bryan C., and Romanczuk, Pawel. "Quantifying the impact of network structure on speed and accuracy in collective decision-making." (2019).
Aiello, Kenneth D., and Simeone, Michael. "Triangulation of History Using Textual Data." Isis 110, no. 3 (2019).

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