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Griffin, W, M D. Laubichler, and W Callebaut. "Agents, Modeling Processes, and the Allure of Prophecy." Biological Theory 3 (2008).
Laubichler, M D.. "The Agora of Knowledge, Review of "Weltwissen"." SCIENCE 330 (2010): 451-452.
Damerow, Julia. Alan Mathison Turing In Embryo Project Encyclopedia., 2010.
Laubichler, M D., and H J. Rheinberger. "Alfred Kuhn (1885-1968) and developmental evolution." Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 302B (2004): 103-110.
Federica, Turriziani Colonna. Alle origini delle specie: embrioni (e uova). Milano: Mimesis, 2011.
Laubichler, M D.. "Anatomy and Physiology in the 19th Century." In The History of Modern Science and Mathematics, edited by Brian Baigrie, 199-213. Vol. 1. New York: Charles Scribners, 2002.
Chew, M. K.. "Anekeitaxonomy: Botany, Place and Belonging." In I.D. Rotherham and R.A. Lambert, eds. Invasive and Introduced Plants and Animals: Human Perceptions, Attitudes and Approaches to Management, 137-152. London: Earthscan, 2011.
Bliss, N. T., B. R. E. Peirson, D. Painter, and M. D. Laubichler. "Anomalous subgraph detection in publication networks: Leveraging truth." In 2014 48th Asilomar Conference on Signals, Systems and Computers., 2014.
Laubichler, M D.. "Art Forms in Nature, Review of "Proteus: A Nineteenth Century Vision"." SCIENCE 308 (2005): 1746.
Gorelick, R, M D. Laubichler, and R Massicotte. "Asexuality and Epigenetic Variation." In Epigenetics: Linking Genotype and Phenotype in Development and Evolution, edited by B Hallgrimsson and B.K.Hall, 87-102. University of California Press, 2011.
Laubichler, M D.. "August Weismann." In Evolution: The first four Billion Year, edited by M Ruse and J Travis. Cambridge, MA: Harvard University Press, 2009.
Laubichler, M D., and Hans-Jörg Rheinberger. "August Weismann and Theoretical Biology." Biological Theory 1 (2006): 202-205.
Laubichler, Manfred D.. "August Weismann: Development, Heredity, and Evolution." Isis 110, no. 3 (2019).
Daniels, Bryan C., and Ilya Nemenman. "Automated adaptive inference of phenomenological dynamical models." 6 (2015): 8133 EP -.
Daniels, Bryan C., William S.Ryu, and Ilya Nemenman. Automated, predictive, and interpretable inference of C. elegans escape dynamics., 2018.
Daniels, Bryan C., William S. Ryu, and Ilya Nemenman. "Automated, predictive, and interpretable inference of Caenorhabditis elegans escape dynamics." PNAS 116, no. 7226 (2019).