Publications

Automated, predictive, and interpretable inference of C. elegans escape dynamics, Daniels, Bryan C., S.Ryu William, and Nemenman Ilya , (2018)

Convenient Interface to Inverse Ising (ConIII): A Python package for solving maximum entropy models, Lee, Edward D., and Daniels Bryan C. , (2018)

Criticality Distinguishes the Ensemble of Biological Regulatory Networks, Daniels, Bryan C., Kim Hyunju, Moore Douglas, Zhou Siyu, Smith Harrison B., Karas Bradley, Kauffman Stuart A., and Walker Sara I. , Phys. Rev. Lett., 09/28/2018, Volume 121, Issue 13, (2018)

Locating decision-making circuits in a heterogeneous neural network, Arehart, Emerson, Jin Tangxin, and Daniels Bryan C. , Frontiers in Applied Mathematics and Statistics, 11/2018, Volume 4, (2018)

Parameter Estimation, Sloppiness, and Model Identifiability., Daniels, Bryan C., Fey Dirk, Dobrzyński Maciej, Munsky B., Hlavacek W., and Tsimring L. , In Quantitative Biology: Theory, Computational Methods, and Models, (2018)

Collective memory in macaque conflict implied by temporal scaling collapse, Lee, Edward D., Daniels Bryan C., Krakauer David C., and Flack Jessica C. , Journal of the Royal Society Interface , 02/2017, Volume 14, (2017)

Control of finite critical behaviour in a small-scale social system, Daniels, Bryan C., Krakauer David C., and Flack Jessica C. , Nature Communications, 02/2017, Volume 8, (2017)

The diversity of experimental organisms in biomedical research may be influenced by biomedical funding, Peirson, B. R. Erick, Kropp Heather, Damerow Julia, and Laubichler Manfred D. , BioEssays, Volume 39, p.1600258–n/a, (2017)

Dual Coding Theory Explains Biphasic Collective Computation in Neural Decision-Making, Daniels, Bryan C., Flack Jessica C., and Krakauer David C. , Frontiers in Neuroscience, Volume 11, p.313, (2017)

Experiments and evidence in sustainability science: A typology, Caniglia, Guido, Schäpke Niko, Lang Daniel J., Abson David J., Luederitz Christopher, Wiek Arnim, Laubichler Manfred D., Gralla Fabienne, and von Wehrden Henrik , Journal of Cleaner Production, (2017)

The Giles Ecosystem – Storage, Text Extraction, and OCR of Documents, Damerow, Julia , Journal of Open Research Software, 09/2017, Volume 5, Issue 1, (2017)

Measuring the contributions of Chinese scholars to the research field of systems biology from 2005 to 2013, Zou, Yawen, and Laubichler Manfred D. , Scientometrics, 1, p.1–17, (2017)

Effect of exercise training on sleep apnea: A systematic review and meta-analysis, Aiello, Kenneth D., Caughey William G., Nelluri Bhargava, Sharma Ashwini, Mookadam Farouk, and Mookadam Martina , Respiratory Medicine, 08/2016, Volume 116, Issue 92, (2016)

An experience-based learning framework: Activities for the initial development of sustainability competencies, Caniglia, Guido, John Beatrice, Kohler Martin, Bellina Leonie, Wiek Arnim, Rojas Christopher, Laubichler Manfred D., and Lang Daniel , International Journal of Sustainability in Higher Education, Volume 17, p.827–852, (2016)

Intersezioni fra Biologia dello Sviluppo ed Ecosistemica. Nuove Prospettive per l’Evoluzione, Federica, Turriziani Colonna, and Rispoli Giulia , Paradigmi, (forthcoming, 2013), (2016)

Quantifying collectivity, Daniels, Bryan C., Ellison Christopher J., Krakauer David C., and Flack Jessica C. , Current Opinion in Neurobiology, Volume 37, p.106 - 113, (2016)

Software development & trans-disciplinary training at the interface of digital humanities and computer science, Peirson, B. R., Damerow Julia, and Laubichler Manfred , Digital Studies / Le champ numérique, (2016)

Automated adaptive inference of phenomenological dynamical models, Daniels, Bryan C., and Nemenman Ilya , Aug, Volume 6, p.8133 EP -, (2015)

Exercise training, sleep and the heart, Aiello, Kenneth D., Mookadam Farouk, and Mookadam Martina , Future Cardiology, Volume 11, p.507-509, (2015)

Extended evolution: A conceptual framework for integrating regulatory networks and niche construction, Laubichler, Manfred D., and Renn Jürgen , Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 11, Volume 324, p.565–577, (2015)

The relativity of biological function, Laubichler, Manfred D., Stadler Peter F., Prohaska Sonja J., and Nowick Katja , Theory in Biosciences, 12, Volume 134, p.143–147, (2015)

Temporal and multi-source fusion for detection of innovation in collaboration networks, Miller, B. A., Beard M. S., Laubichler M. D., and Bliss N. T. , 2015 18th International Conference on Information Fusion (Fusion), July, (2015)

Anomalous subgraph detection in publication networks: Leveraging truth, Bliss, N. T., Peirson B. R. E., Painter D., and Laubichler M. D. , 2014 48th Asilomar Conference on Signals, Systems and Computers, Nov, (2014)

The Life of David Lack: Father of Evolutionary Ecology by Ted R. Anderson, Peirson, B. R. Erick , The Quarterly Review of Biology, 03/2014, Volume 89, (2014)

Between epigenetic research and politic commitment: Marcello Buiatti’s portrait, Federica, Turriziani Colonna , Studies in the History of Biology, (2013)