Publications

Found 260 results
Author Title Type [ Year(Asc)]
2019
Daniels, Bryan C., William S. Ryu, and Ilya Nemenman. "Automated, predictive, and interpretable inference of Caenorhabditis elegans escape dynamics." PNAS 116, no. 7226 (2019).
Damerow, Julia, Erick Peirson, and Manfred D. Laubichler. "A Computational Research System for the History of Science." Culture and Cognition: Essays in Honor of Peter Damerow 11 (2019).
Lee, Edward D., Bryan C. Daniels, Christopher R. Myers, David C. Krakauer, and Jessica C. Flack. "Emergent regularities and scaling in armed conflict data." (2019).
Daniels, Bryan C., and Pawel Romanczuk. "Quantifying the impact of network structure on speed and accuracy in collective decision-making." (2019).
2018
Daniels, Bryan C., William S.Ryu, and Ilya Nemenman. Automated, predictive, and interpretable inference of C. elegans escape dynamics., 2018.
Lee, Edward D., and Bryan C. Daniels. Convenient Interface to Inverse Ising (ConIII): A Python package for solving maximum entropy models., 2018.
Daniels, Bryan C., Hyunju Kim, Douglas Moore, Siyu Zhou, Harrison B. Smith, Bradley Karas, Stuart A. Kauffman, and Sara I. Walker. "Criticality Distinguishes the Ensemble of Biological Regulatory Networks." Phys. Rev. Lett. 121, no. 13 (2018).
Zou, Yawen, and Manfred Laubichler. "From systems to biology: A computational analysis of the research articles on systems biology from 1992 to 2013." PLOS ONE 13, no. 7 (2018).
Arehart, Emerson, Tangxin Jin, and Bryan C. Daniels. "Locating decision-making circuits in a heterogeneous neural network." Frontiers in Applied Mathematics and Statistics 4 (2018).
Daniels, Bryan C., Dirk Fey, Maciej Dobrzyński, B. Munsky, W. Hlavacek, and L. Tsimring. "Parameter Estimation, Sloppiness, and Model Identifiability." In In Quantitative Biology: Theory, Computational Methods, and Models. MIT Press, 2018.
Borriello, Enrico, Sara Walker, and Manfred Laubichler. "A unified, mechanistic framework for developmental and evolutionary change." (2018).
2017
Lee, Edward D., Bryan C. Daniels, David C. Krakauer, and Jessica C. Flack. "Collective memory in macaque conflict implied by temporal scaling collapse." Journal of the Royal Society Interface 14 (2017).
Daniels, Bryan C., David C. Krakauer, and Jessica C. Flack. "Control of finite critical behaviour in a small-scale social system." Nature Communications 8 (2017).
Peirson, B. R. Erick, Heather Kropp, Julia Damerow, and Manfred D. Laubichler. "The diversity of experimental organisms in biomedical research may be influenced by biomedical funding." BioEssays 39 (2017): 1600258–n/a.
Daniels, Bryan C., Jessica C. Flack, and David C. Krakauer. "Dual Coding Theory Explains Biphasic Collective Computation in Neural Decision-Making." Frontiers in Neuroscience 11 (2017): 313.
Caniglia, Guido, Niko Schäpke, Daniel J. Lang, David J. Abson, Christopher Luederitz, Arnim Wiek, Manfred D. Laubichler, Fabienne Gralla, and Henrik von Wehrden. "Experiments and evidence in sustainability science: A typology." Journal of Cleaner Production (2017).
Damerow, Julia, B.R. Erick Peirson, and Manfred Laubichler. "The Giles Ecosystem – Storage, Text Extraction, and OCR of Documents." Journal of Open Research Software 5, no. 1 (2017).
Zou, Yawen, and Manfred D. Laubichler. "Measuring the contributions of Chinese scholars to the research field of systems biology from 2005 to 2013." Scientometrics (2017): 1-17.
Peirson, Erick, Erin Bottino, Julia Damerow, and Manfred Laubichler. "Quantitative Perspectives on Fifty Years of the Journal of the History of Biology." Journal of the History of Biology 50, no. 4 (2017).
2016
Aiello, Kenneth D., William G. Caughey, Bhargava Nelluri, Ashwini Sharma, Farouk Mookadam, and Martina Mookadam. "Effect of exercise training on sleep apnea: A systematic review and meta-analysis." Respiratory Medicine 116, no. 92 (2016).
Caniglia, Guido, Beatrice John, Martin Kohler, Leonie Bellina, Arnim Wiek, Christopher Rojas, Manfred D. Laubichler, and Daniel Lang. "An experience-based learning framework: Activities for the initial development of sustainability competencies." International Journal of Sustainability in Higher Education 17 (2016): 827-852.
Federica, Turriziani Colonna, and Giulia Rispoli. "Intersezioni fra Biologia dello Sviluppo ed Ecosistemica. Nuove Prospettive per l’Evoluzione." Paradigmi (2016).
Daniels, Bryan C., Christopher J. Ellison, David C. Krakauer, and Jessica C. Flack. "Quantifying collectivity." Current Opinion in Neurobiology 37 (2016): 106-113.
Peirson, B. R., Julia Damerow, and Manfred Laubichler. "Software development & trans-disciplinary training at the interface of digital humanities and computer science." Digital Studies / Le champ numérique (2016).
2015
Daniels, Bryan C., and Ilya Nemenman. "Automated adaptive inference of phenomenological dynamical models." 6 (2015): 8133 EP -.

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